1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgtatgaagtgaggtagtgaatttctgtttatatattatatagtctgctgaaaatttttggtcatgtttgtgtaccatgctgggaatcaaactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGG
species | Glycine max |
transcript | GLYMA07G40370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAG ATTGCTCAAAGAAACAGCEST: gi|193628792|gb|FK577628.1|FK577628
genomic: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGgtgatatggc ... aactatgcagATTGCTCAAAGAAACAGC
EST: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAG ATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTEST: gi|17023061|gb|BM094095.1|BM094095
genomic: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGgtgatatggc ... aactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTT
EST: TGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTGCGCATACTATTGCAG ATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTEST: gi|193639391|gb|FK585632.1|FK585632
genomic: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGgtgatatggc ... aactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTT
EST: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAG ATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTEST: gi|7685033|gb|AW755681.1|AW755681
genomic: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGgtgatatggc ... aactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTT
EST: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAG ATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTT
genomic: TGGAGGCTTCACGTTTTGGAAGTACAGAACTTGTGCGCATACTATTGCAGgtgatatggc ... aactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTT
ctgctgaaaatttttggtcatgtttgtgtaccatgctgggaatcaaactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGG
aaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatgaagtgaggtagtgaatttctgtttatatattatatagtctgctgaaaatttttggtcatgtttgtgtaccatgctgggaatcaaactatgcagATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAATGCTTGGTGGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG