1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttattgtcttcttgccctgtgcctaccatttgcattttgttattacaaatttattgcctttgcatttatgcaagcaacttctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTACACCAAAG
species | Glycine max |
transcript | GLYMA07G38880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298174274|gb|HO017610.1|HO017610
genomic: CTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|193392582|gb|FK358741.1|FK358741
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: CCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACC-AAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|192329230|gb|FK020149.1|FK020149
genomic: CCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298185602|gb|HO030815.1|HO030815
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298184680|gb|HO029893.1|HO029893
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAGTTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|17022227|gb|BM093261.1|BM093261
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298180264|gb|HO025479.1|HO025479
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298171399|gb|HO016431.1|HO016431
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298196493|gb|HO041236.1|HO041236
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298182177|gb|HO026352.1|HO026352
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298170833|gb|HO015809.1|HO015809
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|298165292|gb|HO011341.1|HO011341
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTEST: gi|193415611|gb|FK376245.1|FK376245
genomic: TCCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
EST: CCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAA GTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
genomic: CCACGTTGTTACTACTGATCACTCAAGTATTACGAGAATTACCAAAGAAgtatgttatt ... ctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACT
tttgttattacaaatttattgcctttgcatttatgcaagcaacttctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTACACCAAAG
cttctact CT-rich tract
tattacaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttattgtcttcttgccctgtgcctaccatttgcattttgttattacaaatttattgcctttgcatttatgcaagcaacttctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTACACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA