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gttagtacctgcacaactttcatatttagccttttccctttcatactgaattctctacatgaaaccacgaaagaaagaaaaaaaaaactgttttgtcaattcagattatcctattattattgttcactttcaaaaacaaaattatcctattattttcccacccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
species | Glycine max |
transcript | GLYMA07G38750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCEST: gi|298190420|gb|HO032541.1|HO032541
genomic: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATTgttagtacct ... acccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT GGAGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCEST: gi|298164148|gb|HO013793.1|HO013793
genomic: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATTgttagtacct ... acccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCEST: gi|151398247|gb|EV268125.1|EV268125
genomic: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATTgttagtacct ... acccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCEST: gi|298188749|gb|HO035442.1|HO035442
genomic: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATTgttagtacct ... acccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
genomic: GTGAATACACAGGTGCTCCATATTTTTCTGCAATTTCGGCCTTAAAAATTgttagtacct ... acccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATC
tattattgttcactttcaaaaacaaaattatcctattattttcccacccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
ttattttcccaccc CT-rich tract
tttcaaaaacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtacctgcacaactttcatatttagccttttccctttcatactgaattctctacatgaaaccacgaaagaaagaaaaaaaaaactgttttgtcaattcagattatcctattattattgttcactttcaaaaacaaaattatcctattattttcccacccgtgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAACAGATGCTGCTCCTGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA