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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcagaattatatgtcttggcttgagttcgtggtatattgggtatgaatcatattgactagttatttattatggttagGATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCTGATATTCAGTACACA

Basic information

species Glycine max
transcript GLYMA07G36110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36110.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 3
gtaaaatcagaattatatgtcttggcttg-agttcgtggtatattgggtatgaatcatattgactagttatttattatggtt-----agGATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCTGATATTCAGTACACA
||||| |   | ||  || |||  |     | | |   |  | || |      ||  |     |    |||| ||| ||| |     |||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||| ||||| |||||| | 
gtaaactggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcagGATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193533116|gb|FK493678.1|FK493678
EST:     CCTGCTGCCACCAATTATGGGTATTACTGTACAG                         GATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAG
genomic: CCTGCTGCCACCAATTATGGGTATTACTGTACAGgtaaaatcag ... ttatggttagGATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAG
EST: gi|7327247|gb|AW620969.1|AW620969
EST:     TCAGAACTTGTATTATCCTGCTGCCACCAATTATGGGTATTACTGTACAG                         GATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAG
genomic: TCAGAACTTGTATTATCCTGCTGCCACCAATTATGGGTATTACTGTACAGgtaaaatcag ... ttatggttagGATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttcgtggtatattgggtatgaatcatattgactagttatttattatggttagGATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCTGATATTCAGTACACA
                            tattgac  putative branch site (score: 2)
                           atattgactagttatt  TA-rich tract