1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagtttgtgttcaacagtgaatactctaataagtctataattttcatactctaaatagttttcttcctttaaggaaattattaaactcgaaagagttcaattctctgctattcatcaattgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAATTATCTGTATGCCAAAGTTGCTAAATTTATTGAGGATAAATCAAAGCTG
species | Glycine max |
transcript | GLYMA07G11560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAG AGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAAEST: gi|207807220|gb|GD779319.1|GD779319
genomic: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtttgtg ... ttgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAA
EST: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAG AGAATGGTATTCTTGGCATTT-CCAGAAACTGGTGAAGATTAEST: gi|193672900|gb|FK619868.1|FK619868
genomic: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtttgtg ... ttgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAA-CTGGTGAAGATTA
EST: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAG AGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAA
genomic: CTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAGgtagtttgtg ... ttgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAA
gaaattattaaactcgaaagagttcaattctctgctattcatcaattgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAATTATCTGTATGCCAAAGTTGCTAAATTTATTGAGGATAAATCAAAGCTG
tattaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttgtgttcaacagtgaatactctaataagtctataattttcatactctaaatagttttcttcctttaaggaaattattaaactcgaaagagttcaattctctgctattcatcaattgtatgcagAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAATTATCTGTATGCCAAAGTTGCTAAATTTATTGAGGATAAATCAAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG