1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agcttaaacttatgggtgaaaccgcatgaatggttttgtatttacctgtagcatttcatttgacaaatttacgctgaaaatctagtttcattgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATG
species | Glycine max |
transcript | GLYMA07G07770.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAG GCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCEST: gi|7684702|gb|AW755350.1|AW755350
genomic: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAGgtatgcttat ... ttgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTC
EST: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAG GCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCEST: gi|298175909|gb|HO015314.1|HO015314
genomic: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAGgtatgcttat ... ttgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTC
EST: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAG GCTGAGGTTCTTGGATCCGCTAGGGCCAATGATGAAAATCGACCAGAGTTC
genomic: TTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAGgtatgcttat ... ttgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTC
ctgtagcatttcatttgacaaatttacgctgaaaatctagtttcattgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATG
atttgac putative branch site (score: 4)
tttcatt putative PPT
atttgacaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttaaacttatgggtgaaaccgcatgaatggttttgtatttacctgtagcatttcatttgacaaatttacgctgaaaatctagtttcattgcttgtagGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATG
- - - - - - tgggtga
- - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctgaa