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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattagtcatttagttaaaccatttaattattacctttgtgctgtacttctgctttgcagattaaatcttaatagaaatttgacataatttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGCGTAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACCTGTTCTCA

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687559|gb|BF595235.1|BF595235
EST:     CAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCG                         GATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC
genomic: CAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGgtatgctttg ... ttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC
EST: gi|11275001|gb|BF325325.1|BF325325
EST:     TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCG                         GATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATG
genomic: TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGgtatgctttg ... ttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATG
EST: gi|254322525|gb|GR837939.1|GR837939
EST:     TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCG                         GATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC
genomic: TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGgtatgctttg ... ttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC
EST: gi|21889136|gb|BQ742349.1|BQ742349
EST:     TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCG                         GATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC
genomic: TTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGgtatgctttg ... ttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttctgctttgcagattaaatcttaatagaaatttgacataatttggctgtagGATGTATCTGCAATACTGAGTACTGAGGATCATACTGAAATAATGCAAAGCGTAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACCTGTTCTCA
                attaaatcttaataga  TA-rich tract