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...ttaggtttgagtggtaggcagcataattattttccaaattatctaaagtttagtttgcatgaaagaattttctgaagattttatttgtttttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAG
species | Glycine max |
transcript | GLYMA06G15180.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACAEST: gi|192294592|gb|FG986441.1|FG986441
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACAEST: gi|254325516|gb|GR838397.1|GR838397
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
aagtttagtttgcatgaaagaattttctgaagattttatttgtttttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAG
atctaaa putative branch site (score: 3)
ttttatttgttttt putative PPT
aattttctgaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggtttgagtggtaggcagcataattattttccaaattatctaaagtttagtttgcatgaaagaattttctgaagattttatttgtttttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - ttgagtg
- - - - - - - - - - - - - - - - -ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgaa