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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggttatgttgtttgtcttgaagattttgcttcttcctaattcgtggtggcattcgtaagggagttgttgtctgactgttttctgcaatacaaatgtcagGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCCTTTCACTTCGTCTGTGCATGTCCAAAAGGATTTG

Basic information

species Glycine max
transcript GLYMA06G03360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193727749|gb|FK664183.1|FK664183
EST:     GGTTTGAAGGTACAAAG                         GTGGTCTACATTGGAGANGGAAANAATATTGTTCACTCATGGTTGTTGATG
genomic: GGTTTGAAGGTACAAAGgtcaggttat ... caaatgtcagGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATG
EST: gi|21889784|gb|BQ742997.1|BQ742997
EST:     CTGATGCCCTTACCATGGTTGAGCACATAGGTCGGTTTGAAGGTACAAAG                         GTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATG
genomic: CTGATGCCCTTACCATGGTTGAGCACATAGGTCGGTTTGAAGGTACAAAGgtcaggttat ... caaatgtcagGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATG
EST: gi|193541938|gb|FK496134.1|FK496134
EST:     GGTTTGAAGGTACAAAG                         GTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATG
genomic: GGTTTGAAGGTACAAAGgtcaggttat ... caaatgtcagGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtggcattcgtaagggagttgttgtctgactgttttctgcaatacaaatgtcagGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCCTTTCACTTCGTCTGTGCATGTCCAAAAGGATTTG
                        gtctgac  putative branch site (score: 3)
                                         aatacaaat  TA-rich tract