1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
species | Glycine max |
transcript | GLYMA05G31450.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|19346456|gb|BM891336.1|BM891336
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|207845053|gb|GD817534.1|GD817534
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATAEST: gi|208159306|gb|GD954257.1|GD954257
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATA
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAEST: gi|193728938|gb|FK665620.1|FK665620
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|193514317|gb|FK470633.1|FK470633
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGAEST: gi|15285158|gb|BI469049.1|BI469049
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGA
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|20813012|gb|BQ297490.1|BQ297490
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|193355266|gb|FK320887.1|FK320887
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: AGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAATAACTTGAACEST: gi|213588844|gb|DB967938.1|DB967938
genomic: AGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGNGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|17021895|gb|BM092929.1|BM092929
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|20814880|gb|BQ299358.1|BQ299358
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|193718097|gb|FK653829.1|FK653829
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|193334748|gb|FK300568.1|FK300568
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: ATATATGCCCCATTCAAGAGCCTGCTTCCAATG GCAAGCCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|208327147|gb|GE122369.1|GE122369
genomic: ATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCCGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|207844116|gb|GD815211.1|GD815211
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTEST: gi|120533531|gb|EH261664.1|EH261664
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|120529472|gb|EH257606.1|EH257606
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTCTGGGGGATGGGATATCAGTAACTTGAACEST: gi|15338188|gb|BI498852.1|BI498852
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|208161439|gb|GD963893.1|GD963893
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTEST: gi|22540793|gb|BU090627.1|BU090627
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGCGTTTGGGGGATGGCATATCAGTEST: gi|20813560|gb|BQ298038.1|BQ298038
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGT
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|120495837|gb|EH224004.1|EH224004
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTATGGGGGATGGGATATCAGTAACTTGAACEST: gi|9986211|gb|BE660319.1|BE660319
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: AGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|9258023|gb|BE346146.1|BE346146
genomic: AGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|208093937|gb|GD896154.1|GD896154
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGEST: gi|208192854|gb|GD989247.1|GD989247
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGG
EST: TTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAACG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGAEST: gi|10237426|gb|BE806314.1|BE806314
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGA
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTT-GGGGGATGGGATATCAGTAACTTGAACEST: gi|14259658|gb|BG882566.1|BG882566
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACEST: gi|208084212|gb|GD880466.1|GD880466
genomic: CAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG GTAAACCCTGATGATGTTGTGTTTGGGGGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGA
ttatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
agtcttaattaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG