1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacggatgccctattgggccttctaataatatggctcataattattggttgatactatatagcatcgaagaattttgtgttgtatttaacttttaccctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGG
species | Glycine max |
transcript | GLYMA05G28140.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTTCGAGTEST: gi|193314124|gb|FK282529.1|FK282529
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCT-CGAGT
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|193556591|gb|FK515244.1|FK515244
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|6455734|gb|AW186417.1|AW186417
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|208096065|gb|GD895035.1|GD895035
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|207777183|gb|GD748278.1|GD748278
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|207731537|gb|GD707066.1|GD707066
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|208188384|gb|GD983152.1|GD983152
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCT-NAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCEST: gi|193412704|gb|FK376927.1|FK376927
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGgtacggatgc ... accctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTC
tgatactatatagcatcgaagaattttgtgttgtatttaacttttaccctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGG
atttaac putative branch site (score: 3)
cttttaccctctc CT-rich tract
ttgtatttaactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggatgccctattgggccttctaataatatggctcataattattggttgatactatatagcatcgaagaattttgtgttgtatttaacttttaccctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA