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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaggcaacttcactctcagtagctgcagctgttgttgtcattgaatttgtgttaacgcgggtgtatttatcttttttaagtctttgttggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA

Basic information

species Glycine max
transcript GLYMA05G03730.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03730.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaggcaacttcactctcagtagctgcagctgttgttgtcattgaatttgtgttaacgcgggtgtatttatcttttttaagtctttgttggttgattg---tacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
                   |||  | ||   |   |   | |||||   ||||| ||        ||  |  |   |  | ||   ||| |||||    ||    |||||||| ||||| |||| |||| |||||||||| ||||||||||| |||||||| |||||  ||| |||  |||| | |||| || | ||||| |  |||||
---------------gtaatcatcaactatgggactaaatttcatttc-tttgttttggtttctttg-gtgcaaagtcctaaatcttttattggtaatatgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAA

upper sequence: GLYMA05G03730.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G11960.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaggcaacttcactctcagtagctgcagctgttgttgtcattgaatttgtgttaacgcgggtgtatttatcttttttaagtctttgttggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
       | || |  || || |  |  |  || |    |||||| | |   |   ||  |   ||| | || ||  ||  |     ||| |   |  ||||||  ||||||||||| |||| |||||| |||||||| ||||||||||| |||||||| |||||  |||||||  |||||| |||| || | ||| |||  |||||
-------gtaa-tgaacacttatgatttatagtt----ttgtcaataa---tccattcgcctaggt-tcttgattcttgatctaattttatctatgtattgta--gGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698686|gb|BW656511.1|BW656511
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|23056602|gb|BU577755.1|BU577755
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|18733004|gb|BM527371.1|BM527371
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGT
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGT
EST: gi|209729083|gb|BW655073.1|BW655073
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|192306405|gb|FG997159.1|FG997159
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|8669781|gb|BE190888.1|BE190888
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|6455321|gb|AW186004.1|AW186004
EST:     TCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
EST: gi|120496159|gb|EH224326.1|EH224326
EST:     TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAA                         GTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA
genomic: TAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAgtatgaggca ... gattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttaacgcgggtgtatttatcttttttaagtctttgttggttgattgtacagGTTCTGATGAGCAAAAATTCCTGGAAGCTTCGATGGCTTATGTGTCTGGAAAACCAATTATGAGTGACAAAGAGTTTGATGAGTTGAAACTGAGGCTAAA
                tatttatcttttttaa  TA-rich tract