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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattgagtttgccccattttctttctccatcttagctttctagagacaaggagaataaagttgaaacagaaagaacaatgaaacttctaggtgtaacttccatttattacttgttttatatgataacttttttactatacatctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGATCAATGCATTTGGTCCAGAAATGATTGGGGAAAATGTAGAAGGGAAGGT

Basic information

species Glycine max
transcript GLYMA04G42010.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42010.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g15360.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtattgagtttgccccattttctttctccatcttagctttctagagacaaggagaataaagttgaaacagaaagaacaatgaaacttctaggtgtaacttccatttattacttgttttatatgataacttttt--tactatacatctat-----acagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGATCAATGCATTTGGTCCAGAAATGATTGGGGAAAATGTAGAAGGGAAGGT
        | |||||    ||  |  | | |  |       |  | || |   ||||   |  |  |||||   |     |||  |   ||| | | || |  |   || | ||   |  | | ||  | | || ||   |   |    ||||     ||||||||||| ||  |||||| | | |||||||| |||||||||||||||||||||  ||| ||||| |||||| |||||||||| ||||||||||| || ||
-------gtaagtttctgacagatcttgtatttaagacc-ttgacaagtggacaggaatcttgaaatgaaatgcagttctcaagtagttttccatg-gtgaacttggttcacta---gcctcagatattcatttcttatcatagtgttgctatgatgtacagATCTTGGGGATGATGCTAAAGTTGAAAAAATAGGACCTCCAGAGAAAGTGATCGCTGCTTTTGGACCAGAAGTGATTGGGGAGAATGTAGAAGGAAAAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308568|gb|CD393771.1|CD393771
EST:     GTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|15285767|gb|BI469658.1|BI469658
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGTTG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|5509839|gb|AI856397.1|AI856397
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|209716366|gb|BW657486.1|BW657486
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|151397074|gb|EV266947.1|EV266947
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|31469528|gb|CD411556.1|CD411556
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|31561437|gb|CD487275.1|CD487275
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|213604484|gb|DB983516.1|DB983516
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGAAGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|105633575|gb|DW246938.1|DW246938
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACGATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|5510308|gb|AI856750.1|AI856750
EST:     GAAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GAA-GGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttccatttattacttgttttatatgataacttttttactatacatctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGATCAATGCATTTGGTCCAGAAATGATTGGGGAAAATGTAGAAGGGAAGGT
                         tgataac  putative branch site (score: 2)
      atttattacttgtttt  TA-rich tract