1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcacaatagccaacactttattttttggtgttgttttgtctgcttactgtactaaggaaattaattgtgttattgctggtgctggctattacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAG
species | Glycine max |
transcript | GLYMA04G12890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTANTTTTGAAAGTG AACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTEST: gi|15203210|gb|BI425978.1|BI425978
genomic: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGgtacgtaatc ... tacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCT
EST: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTG AACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTEST: gi|23727557|gb|BU761813.1|BU761813
genomic: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGgtacgtaatc ... tacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCT
EST: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTG AACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCT
genomic: TTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGgtacgtaatc ... tacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCT
tactgtactaaggaaattaattgtgttattgctggtgctggctattacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAG
aaattaattgtgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacaatagccaacactttattttttggtgttgttttgtctgcttactgtactaaggaaattaattgtgttattgctggtgctggctattacaatacagAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - ccaacac
- - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtgc