1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcaagctcaactcttgaatcatattatgaatactagatcatttttgctctgtctatatattctatggcatctgaaattatgtagttgtgtaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGACGCCTCAGAAGCTGGCAGTGACAACCCA
species | Glycine max |
transcript | GLYMA04G11160.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTGGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGAAGTGGAATATTEST: gi|18848808|gb|BM567920.1|BM567920
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|209713150|gb|BW681684.1|BW681684
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|193677699|gb|FK614925.1|FK614925
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: TGTTTGGTGGTCAGGTCACCGATGAAGAGGTGGAGAGCTTAAATAAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACCGGTAGTGGAATATEST: gi|151400095|gb|EV269909.1|EV269909
genomic: TGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAA-Ggtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATAT
EST: GCGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|192324392|gb|FK015743.1|FK015743
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|17022986|gb|BM094020.1|BM094020
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTGGAGAGCTTAAATAAAAG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
genomic: GTGTTTGGTGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAAAGgtgagatcta ... taatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
tgctctgtctatatattctatggcatctgaaattatgtagttgtgtaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGACGCCTCAGAAGCTGGCAGTGACAACCCA
tttcc CT-rich tract
tctatatattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaagctcaactcttgaatcatattatgaatactagatcatttttgctctgtctatatattctatggcatctgaaattatgtagttgtgtaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGACGCCTCAGAAGCTGGCAGTGACAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG