1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atagttttcttcataaatcccattttaaactcgtggagtctgtatctttggcatcttcattgtgatctgcacttcaacccttgtgtgcacaaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAACTTGATGTTTCAGTGAAACTTCTAATAGATTCTGCTGTTGCATATACTAT
species | Glycine max |
transcript | GLYMA03G42430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAG AGGGAAGACCAGACCGAACEST: gi|254329055|gb|GR833427.1|GR833427
genomic: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAGgtttttgccc ... aaattggcagAGGGAAGACCAGACCGAAC
EST: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAG AGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAACEST: gi|8670487|gb|BE191594.1|BE191594
genomic: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAGgtttttgccc ... aaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAAC
EST: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAG AGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAACEST: gi|22927216|gb|BU544355.1|BU544355
genomic: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAGgtttttgccc ... aaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAAC
EST: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAG AGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAAC
genomic: CCTAAAACTTGCTGCACAAAATAACAAACTATTTCGGGTCTTCTGCACAGgtttttgccc ... aaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAAC
ctttggcatcttcattgtgatctgcacttcaacccttgtgtgcacaaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAACTTGATGTTTCAGTGAAACTTCTAATAGATTCTGCTGTTGCATATACTAT
acaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttttcttcataaatcccattttaaactcgtggagtctgtatctttggcatcttcattgtgatctgcacttcaacccttgtgtgcacaaattggcagAGGGAAGACCAGACCGAACAGGTTTGCGGTTGTCGAATGAGCTGGCCAAACTTGATGTTTCAGTGAAACTTCTAATAGATTCTGCTGTTGCATATACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - -gagtctg
- - - - - - - - - - - - - - - - - - - - - - -ctttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc