1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcatatttttgtagattttgtttgaattgcttttaatatttatggatgttgctaatgatgattttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATGTAATCAACGTGAAGCAGATTGCAAAG
species | Glycine max |
transcript | GLYMA03G42370.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|213602675|gb|DB956611.1|DB956611
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|213589227|gb|DB957759.1|DB957759
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|151405667|gb|EV275481.1|EV275481
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|209702899|gb|BW667434.1|BW667434
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|208155594|gb|GD951999.1|GD951999
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|208228908|gb|GE024272.1|GE024272
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|208215664|gb|GE008516.1|GE008516
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|213600299|gb|DB970277.1|DB970277
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|208196800|gb|GE001032.1|GE001032
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAA-GATCATAAACCCGAACTCAGAAGATGCCAAATATEST: gi|213611619|gb|DB969007.1|DB969007
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG GTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttt ... attttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATAT
ttttgtttgaattgcttttaatatttatggatgttgctaatgatgattttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATGTAATCAACGTGAAGCAGATTGCAAAG
tgctaat putative branch site (score: 2)
tttgaattgcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatatttttgtagattttgtttgaattgcttttaatatttatggatgttgctaatgatgattttaacagGTAGCAAGGTGCACAAAGATCATAAACCCGAACTCAGAAGATGCCAAATATGTAATCAACGTGAAGCAGATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG