Sequence
atgc intronic sequence ATGC exonic sequencegtgcagtgccaaattcaacaagttccttttttttttgtttctgttactagatttggactagtttttctcaattttcatttttttatggttcttgtgcagTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCC
Basic information
species | Glycine max |
transcript | GLYMA03G34080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgcagtgccaaattcaacaagttccttttttttttgtttctgttactagatttggactagtttttctcaattttcatttttttatggttcttgtgcagTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCC
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-------gtaagaatcttcaaattcttagtctttttgtttcttcttccttatctg---------------atctgtttttttttgggaatct----cagCTTGGTAATTTCATCCATTACATGGCGACTTTTGTTTCTGGATTCATCGTGGGTTTCACTGCGGTGTGGCAACTAGCTTTAGTGACTCTCGCGGTGGTTC
upper sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 3
gtgcagtgccaaattcaacaagt-tccttttttttttgtttctgttactagatttgg--actagtttttctcaattttcatttttt-tatggttcttgtgc--agTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCC
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--gtgaaaccaaaacctatgtctgttctccacatttctttcttggttttgtatttgataattagctctgaatagacctggttttccctgtgttttctgggcgtagTTGGGTAATTTCATTCACTACATGGCAACATTTGTGTCTGGATTTGTAGTGGGTTTCACTGCTGTGTGGCAATTGGCACTTGTCACTCTTGCTGTGGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactagatttggactagtttttctcaattttcatttttttatggttcttgtgcagTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCC
ttcttgt CT-rich tract
tagtttttctcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcagtgccaaattcaacaagttccttttttttttgtttctgttactagatttggactagtttttctcaattttcatttttttatggttcttgtgcagTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT