1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtctttctttcacttatgatgttcaatatttctattcttcaacgatgtgaatttcaccttatacttgtactacaacagtaagagattattattttcagGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAG
species | Glycine max |
transcript | GLYMA03G29750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTEST: gi|16348675|gb|BI974279.1|BI974279
genomic: TCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGgtaaggactc ... ttattttcagGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
EST: TCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGG GTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
genomic: TCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGgtaaggactc ... ttattttcagGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTT
gatgtgaatttcaccttatacttgtactacaacagtaagagattattattttcagGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAG
ttattttc CT-rich tract
taagagattattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtctttctttcacttatgatgttcaatatttctattcttcaacgatgtgaatttcaccttatacttgtactacaacagtaagagattattattttcagGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - ctttcac
- - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtac