1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacaaagaaaactgcaacaattgaagcaaatatttcttttatataaaatataaaaatattacagtgttttgagaaactaatgtatttcatcgctatacagAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGATTGACCTTGGAAAGGCA
species | Glycine max |
transcript | GLYMA03G01100.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAG AACTTTTCAAGATGEST: gi|209719263|gb|BW679805.1|BW679805
genomic: AGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAGgtgtttacat ... cgctatacagAACTTTTCAAGATG
EST: AGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAG AACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTG
genomic: AGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAGgtgtttacat ... cgctatacagAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTG
aaatataaaaatattacagtgttttgagaaactaatgtatttcatcgctatacagAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGATTGACCTTGGAAAGGCA
aactaat putative branch site (score: 2)
tttcatc putative PPT
taaaaatattacagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaagaaaactgcaacaattgaagcaaatatttcttttatataaaatataaaaatattacagtgttttgagaaactaatgtatttcatcgctatacagAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGATTGACCTTGGAAAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - aagaaaa
- - - - - -ctgcaac
- - - - - - - - - - - gaagcaaa
- - - - - - - - - - - - - - - - - - - - - ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaac