1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggaacataaataaaataaattcctctctttatttgaagttaaattgaccttccctgtcagattctaataacattttctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTG
species | Glycine max |
transcript | GLYMA02G47340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAG GAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAEST: gi|192304393|gb|FG996715.1|FG996715
genomic: GTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAGgttggaacat ... ctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCA
EST: -TGCTGGGCAGG-TCTCATTGGTTGGTGGATGGTCAAA-GTGGTTTAGAG GA-C-ACCATCTGA-TATTCTCAGCCAAGG-TA-GCCCTTATCGTCTTGCA
genomic: GTGCTGGGCAGGGTCTCATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAGgttggaacat ... ctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCA
tttgaagttaaattgaccttccctgtcagattctaataacattttctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTG
taataac putative branch site (score: 1)
cattttctttcttt CT-rich tract
taataacattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaacataaataaaataaattcctctctttatttgaagttaaattgaccttccctgtcagattctaataacattttctttctttagGAACCACCATCTGAATATTCTCAGCCAAGGGTAAGCCCTTATCGTCTTGCAGCTCATCTTACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA