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...ggtggcaagttcctaatcttgcttagtggttgtaattgttttttatatgatgatatcctttgaagtttcttacaactattttttttattatgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG
species | Glycine max |
transcript | GLYMA02G46200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|207815546|gb|GD788697.1|GD788697
genomic: GGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAEST: gi|13481968|gb|BG511311.1|BG511311
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|13251924|gb|BG362827.1|BG362827
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|213615236|gb|DB965044.1|DB965044
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|213616511|gb|DB965709.1|DB965709
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|209721887|gb|BW680046.1|BW680046
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|193557293|gb|FK511606.1|FK511606
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGGTGTGGATTTGTCCAGAACTTCAGTCACATAEST: gi|120491274|gb|EH219441.1|EH219441
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|208079599|gb|GD875787.1|GD875787
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|209726695|gb|BW672449.1|BW672449
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|298170020|gb|HO018644.1|HO018644
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|7924360|gb|AW830386.1|AW830386
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: TTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAEST: gi|298174924|gb|HO014841.1|HO014841
genomic: TTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
EST: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAG ATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
genomic: GGTCTGGCCCATCAGTTTCTGCTAGAGCTTCTTCCATTGTGGAAAAAGAGgtgtttgcct ... tgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATA
tatgatgatatcctttgaagtttcttacaactattttttttattatgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG
ttcttac putative branch site (score: 2)
aagtttcttacaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtggcaagttcctaatcttgcttagtggttgtaattgttttttatatgatgatatcctttgaagtttcttacaactattttttttattatgtttaacagATTGTATTTCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG
- - - - gttccta
- - - - - - - - -cttgctt
- - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctttg