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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaagatataagcaaaattggttgttggtttcatgcaatcttaatagcaacagtgttgttaagcattattaaggttctgtttcacaccctatctgtaatttattttaaggctgttgtcttacttgttctgttttgtttcattacagATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT

Basic information

species Glycine max
transcript GLYMA02G40520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 4
gtaagttgaagatataagcaaaattggttgttggtttcatgcaatcttaatagcaacagtgttgttaagcattattaaggttctgtttcacaccctatctgtaatttattttaaggctgttgtcttacttgttctgttttgtttcattacagATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT
                                            |||   |        |||    |   |||||     ||   |||           | |||||  ||||       || | |   || || ||  || |||   ||||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||| || |||
--------------------------------------------tctatttcatgctgttgtctgaatatattatactcatttgattttttttttcccttttaattctttttt------ttatttatttttttttgggttcttt--gtacagATCTCCATTGGTTATTTTCTGTCAGACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395391|gb|EV265262.1|EV265262
EST:     GCGACGTAGTTATTAATAGATCATCAACATTATCAGATGCAGTATTGGGG                         ATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTT
genomic: GCGACGTAGTTATTAATAGATCATCAACATTATCAGATGCAGTATTGGGGgtaagttgaa ... ttcattacagATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtaatttattttaaggctgttgtcttacttgttctgttttgtttcattacagATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT
                        gtcttac  putative branch site (score: 3)
                                  ttctgttttgtttc  putative PPT
     aatttattttaa  TA-rich tract