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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatataagttttcatcatttgcttcctgaatttgtgcttgttaactaatgttagagtagtttcgtttttgactttatgtcaatgtgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG

Basic information

species Glycine max
transcript GLYMA02G34640.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34640.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g46640.1 (Oryza sativa), 3'ss of exon 3
gtgagtatataagttttcatcatttgcttcctgaat-ttgtgcttgttaactaatgttagagtagtttcgtttttgactttatgtcaa-------tgtgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG
    |||| |   ||||||| ||   ||||| |  |  |  | |  |  |||| | |        ||  | |  | || |||| |          ||||   ||||| ||| | ||||| ||  ||||||| |||||||||||| | ||||||||||||||    ||  |  |    || |||||||| ||     |  |  |||| 
----gtatgttgtttttcataatgc-cttccagtttactccgatgatgtactattatcttcccttttatgataataacattattttggaatggtctgtgttcaacagGAAACTTCTACTACCCACAATTGCAGCACTTCCTTTGCTGATGGCATATGCTGGTGGTACTTCCGTCAGCATTCCAAAGCCTCTAACATCTTATGTTGGA

upper sequence: GLYMA02G34640.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------gtgagtatataagttttcatcatttgcttcctgaatttgtgcttgttaactaa--tgttagagtagtttcgtttttga-ctttatgtcaatgtga-----agaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG
                              ||| |   || | |   ||   ||||      | ||  |      ||  ||   | ||  ||| ||   |   | || | |||||| | ||| |     | ||||| |||||| || | |||||| ||||||| |||||  |||| ||||| |||||||| || || |||||| ||||||||||||| ||  ||||| || |||||
gtgagtatttggtcattttcaaaggttttctgatttcctagggtcatatatcttgcagagatatttaatttccactacatagacttttgtagttgtgctgaaatagatccttatgtgactgtaattctgaaaacagGAAATTAATATTGCCATCATTTGCTGCTCTTCCCCTGTTGATGGCTTATGCTGGCCATACCACTATAATTATACCAAAGCCTCTCATCCCATACGTTGGG

upper sequence: GLYMA02G34640.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S281_35V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagtatataagttttcatcatttgcttcctgaatttgtgcttgttaactaatgtta--gagtagtttcgtttttgactttatgt-caatgtgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG-
 |||   | |   | |  |||  ||| |       |||   |   |   |  | | ||   | || | |   |  |   | ||| |      |      ||| ||| |  | |||||||||||||| || ||||| ||||||||||| ||||||||    || |  || ||||| ||||| ||  ||   || ||| || || 
ttgatcgttt--ctgtcgatcccttgttcttcagttttagtcacttctgcggaggatatcaaatattgttactcatagatatatttgtggcatttcttgcagCAAACTGTTTCTCCCATCAATTGCAGCCCTTCCCTTGTTAATGGCGTATGCTGGGAGGACCAACATTGTTATTCCAAAACC-TTTACGCCCCACTTTAGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305576|gb|FG998332.1|FG998332
EST:     ATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGT                         AAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGC
genomic: ATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGTgtgagtatat ... tgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGC
EST: gi|15815084|gb|BI787359.1|BI787359
EST:     ATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGT                         AAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGC
genomic: ATGACATTGCTAGGATTTGTTGACGATGTCCTTGATGTCCCATGGAGAGTgtgagtatat ... tgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaactaatgttagagtagtttcgtttttgactttatgtcaatgtgaagaacagAAAATTACTACTCCCATCAATTGCTGCACTTCCTTTGTTAATGGCATATGCTGGACACACAACTATAGTTATACCAAAGCCACTTGTCCCACACATTGGG
      taatgtta  TA-rich tract