1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaacaaaatggaaataacatgtgatgatagttcatatatttgcttcattctgttcaatcctgttaataataatggattctcgctcatgtcaattttctagGACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAGCCTAATAAATACTGGGTTGAAAATTCTCAGAAGAGG
species | Glycine max |
transcript | GLYMA02G12480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAG GACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAGEST: gi|4396522|gb|AI495519.1|AI495519
genomic: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAGgtatgtctca ... aattttctagGACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAG
EST: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAG GNACTGTGATGCGATT-CTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAEST: gi|213588337|gb|DB967823.1|DB967823
genomic: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAGgtatgtctca ... aattttctagG-ACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAA
EST: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAG GACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAG
genomic: TGTCTAACATGACAAACCAGACAATTAAACTTGGTGGTGGTCTACGACAGgtatgtctca ... aattttctagGACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAG
cattctgttcaatcctgttaataataatggattctcgctcatgtcaattttctagGACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAGCCTAATAAATACTGGGTTGAAAATTCTCAGAAGAGG
tgttaat putative branch site (score: 3)
ttttct putative PPT
ttaataataatggatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaaaatggaaataacatgtgatgatagttcatatatttgcttcattctgttcaatcctgttaataataatggattctcgctcatgtcaattttctagGACTGTGATGCGATTTCTGTAATGAAGGCTGGCAGACTAAGGTTCTCAAAGCCTAATAAATACTGGGTTGAAAATTCTCAGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
aaacaaa
- - - - - - - - acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc