1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacttcgtaccccattgcccattattaaatagctaatggcctaacaagttattatgactgtgccttggtgctgagattttgaattcaaaatttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCT
species | Glycine max |
transcript | GLYMA02G10580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGNCA-CCATTG GGAATTCTTGTTTTTGEST: gi|192327381|gb|FK017798.1|FK017798
genomic: ACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATG-CAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTG
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|209706831|gb|BW683196.1|BW683196
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTEST: gi|16349327|gb|BI974922.1|BI974922
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCT
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|23059354|gb|BU578370.1|BU578370
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|120532846|gb|EH260979.1|EH260979
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTCTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|192302471|gb|FG994807.1|FG994807
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|151396916|gb|EV266789.1|EV266789
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCEST: gi|19453578|gb|BM954988.1|BM954988
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctc ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
aagttattatgactgtgccttggtgctgagattttgaattcaaaatttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCT
attttgaattcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttcgtaccccattgcccattattaaatagctaatggcctaacaagttattatgactgtgccttggtgctgagattttgaattcaaaatttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATCTTGGAGTCTACCCGCACATTAATATCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - -ccccatt
- - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - -cctaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - actgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattc