Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA

Basic information

species Glycine max
transcript GLYMA02G09820.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G02600.5 (Arabidopsis thaliana), 3'ss of exon 3
gtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA
   ||| |   | |  |   || |   |    |  | | ||    | ||    | | | | |   | |   ||    ||| |||        | | |    |  ||||||| || | |||  || |  | ||  ||||| |||| || || ||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||||
--gttagaaacttagaatttctgaaggagagtaccgtttgcttcaaaatgtcttctttcgca--tatataatta---acagtaaagttggcctttcttgatgtgcagGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGA

upper sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 2
gtattaaa--ttttaaatacccctcatttattta-attggtagcaagcatattctatttg--ttgaaacgacact-----gttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA
||  |||    |||   | | | |  ||||| |  | |  |  |     ||| | ||  |  ||||   |  | |     | | ||    ||     ||  || |||||| |  |||| || || |||||  || |  ||||    ||  ||||||| || |||||||||||||| ||||||||||| || |||||||| ||||| |||||||| ||
gtgataagatctttggctcctcatggtttatctgtaataattcctcttgtatgcaataggaattgatgtgttatttgaaagattgaactgatggtttgat-ttatttgctagagcagGCCTGTTATTCTCTGTTCTGGTAACAGTGGTTATTACTGATGCAATAAAAAATGCAGTTGGTCGACCTCGACCAGACTTCTTTTGGCGTTGTTTTCCTGA

upper sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ15968 (Selaginella moellendorffii), 3'ss of exon 2
gtattaaattttaaatacccctcatttatttaattggtagcaagcatattctatttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA
                                       | |||  | |  |  || ||       | ||           |      ||  || |    |   |||| ||    |||||  |     |  |    ||  | ||  | || || ||     | || ||||| ||||| ||||| |||||||||||||| ||||||||
---------------------------------------gtaagtttttcttggtttttcttctctctcttcctacacttgttttctcaa--tgcta--cgatccagGGCTGGCTTTCTCACTCGCTCTTGCTGGTGTTGTGACAAATGCGATCAAGGTGTCTGTTGGTCGGCCTCGGCCGGATTTCTTCTGGCGATGCTTTCCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259326|gb|BE347403.1|BE347403
EST:     TGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTAT                         GTCTATTGTTCTCCATTTTAATAACCTGAGTATTTACTGAACCCATAAAAA
genomic: TGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTATgtattaaatt ... gctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttgaaacgacactgttggagacaataacaggaaattgtttgctggcacagGTCTATTGTTCTCCATTTTAATAACCTCAGTATTTACTGAAGCCATAAAAAATGCAGTAGGTCGACCTCGTCCGGACTTCTTCTGGCGATGTTTTCCAGA
                          caataac  putative branch site (score: 2)
                                    aaattgttt  TA-rich tract