Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcctctttcctttcattgattttgtttgtgtcaaatgcaatgtcaggaaggataaaacgcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacggggtcatgaggaagGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAG

Basic information

species Glycine max
transcript GLYMA02G01000.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgtcctctttcct---ttcattgattttgtt----tgtgtcaaatgca-atgtcaggaaggataaaacgcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacggggtcatgaggaag-
||| ||  ||||  ||   |||  ||| ||||||    | | |||     | || |    | | ||   |   |    |||||   ||   |||||||   | |    | ||||| |||||||| || ||||||||||   |||||||||||||| ||||| || ||||||||||| |||||||||||  |||||||||| ||||||||||
gtgcgtgttcttaactatattctatgagtttgttgaagtatatcatggaaatatattcacatgaattgcatatatgcattcttccattgaatttctca--aacttatgttttgacgaaggtgacagGATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG

upper sequence: GLYMA02G01000.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ23527 (Selaginella moellendorffii), 3'ss of exon 2
gtgtgtcctctttcctttcattgattttgtttgtgtcaaatgcaatgtcaggaaggataaaacgcaactgttcttaattttgttttctc---atggaatataatgttgacaaaggtgacggggtcatgaggaag-
                                                         | ||  | | |  || ||  |||   |||      | ||  |  | | ||  |    ||| | ||||  ||| |||   || ||  ||||||||||||||||||| |||||||| || |||||  |  |||| || ||||| |||||||
----------------------------------------------------gtatgtcaagtgtatcctttttttgtttctcttttaataaacggtgttcattattttctgttgtg-cagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgttttctcatggaatataatgttgacaaaggtgacggggtcatgaggaagGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAG
                        tgttgac  putative branch site (score: 3)
                 aatataatgtt  TA-rich tract