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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattattatatatgtggctagcaatttcattcactgacagttgctagcatgcatgaattcctgctaactttgtaaattgattttatttttgagtcattataattggttcgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAA

Basic information

species Glycine max
transcript GLYMA01G42360.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42360.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatattattattatatatgtggctagcaatttcattcactgacagttgctagcatgcatgaattcctgctaactttgtaaattgattttatttttgagtcattataattggttcgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAA
                          | |||  |||  |||    |   |||   | |||   ||  |  |   ||  |   |  |     |  |  |    ||||   |  |  |      |||||| ||||| |||| |||  ||||||| || ||||||||||| |||||||| ||||||||||  ||  |||| | |||| || | |||||||  |||||
--------------------------gtaat--catcaactatggg--actaaatttcatttctttgttttggtttctttggtgcaa--agtcctaaatcttttattggtaatatgaaacacagGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAA

upper sequence: GLYMA01G42360.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G11960.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatattattattatatatgtggctagcaatttcattcactgacagttgctagcatgcatgaattcctgctaactttgtaaattgattttatttttgagtcattataattggttcgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAA
                              |      |||| |   ||  |||  |     |    |   |  | |   |  ||   || ||| ||||   | | | ||   |  |   ||||||||||||||| |||| ||| || ||||| || ||||||||||| |||||||| ||||||||||| ||  |||||| |||| || | ||| | |  |||||
-----------------------------gtaatgaacacttatgatttatagttttgtcaataatccattcgcct---aggtt--cttgattcttgatctaattttatc--tatgtattgtagGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698918|gb|BW652816.1|BW652816
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATAGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|209727737|gb|BW658476.1|BW658476
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|209724933|gb|BW669623.1|BW669623
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|213590959|gb|DB973742.1|DB973742
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|192313508|gb|FK004132.1|FK004132
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|192319988|gb|FK013008.1|FK013008
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
EST: gi|192313523|gb|FK004133.1|FK004133
EST:     TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAA                         GTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA
genomic: TAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAgtatattatt ... cgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaactttgtaaattgattttatttttgagtcattataattggttcgctgtgtagGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAA
     tttgtaaattgatttt  TA-rich tract