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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatttacctaagcttattctaaggccatagttgcctgagtgtctaaatcttattttgatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA

Basic information

species Glycine max
transcript GLYMA01G04270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 6
gtatgcaatttacctaagcttattctaaggccatagttgc--ctgagt-----gtctaaatcttattttgatttgtttct-----tggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
||||||| || | || | | ||| |||||    ||||||   |||||      |||| |   ||| ||  ||||| || |     |||||||||||| |||||||| ||||||| |  || || |||||||||||||||| |||| ||||||| ||||||||
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgcctgagtgtctaaatcttattttgatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
                taaatcttattttgat  TA-rich tract