1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgatgcaataatatgtagtttgatctgtaagatcaacagacaaggattctacttgcatatttattgattctgaaaatttgataaatttgtgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATTCTTGCACGTGTGTGGGAAAATGACACAGAACTTGATATTTCAAACAAT
species | Glycine max |
transcript | GLYMA01G02630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAG AACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATEST: gi|9983448|gb|BE657556.1|BE657556
genomic: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
EST: CTGGGGGGAATGATATAGAAAANAG NNNNACTCTTGGATTTTGGGNNGGTCATCGTAACTNNAAAATCAGAGTTATEST: gi|17963174|gb|BM269926.1|BM269926
genomic: CTGGGGGGAATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
EST: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAG AACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATEST: gi|193658591|gb|FK604244.1|FK604244
genomic: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
EST: CAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAG AACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATEST: gi|254319654|gb|GR830786.1|GR830786
genomic: CAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
EST: TGCTACAGCCATTTGCTCTTCCTGCTNNNNNNNAATGATATAGAAAACAG AACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATEST: gi|17963123|gb|BM269876.1|BM269876
genomic: TGCTACAGCCATTTGCTCTTCCTGCTGGGGGG-AATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
EST: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAG AACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
genomic: GTGCTACAGCCATTTGCTCTTCCTGCTGGGGGGAATGATATAGAAAACAGgtaaagtttt ... tgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTAT
gattctacttgcatatttattgattctgaaaatttgataaatttgtgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATTCTTGCACGTGTGTGGGAAAATGACACAGAACTTGATATTTCAAACAAT
atatttattgattctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgcaataatatgtagtttgatctgtaagatcaacagacaaggattctacttgcatatttattgattctgaaaatttgataaatttgtgctttgcagAACTACTCTTGGATTTTGGGCCGGTCATCGTAACTCTAAAATCAGAGTTATTCTTGCACGTGTGTGGGAAAATGACACAGAACTTGATATTTCAAACAAT
-tgatgca
- - - - - - tatgtag
- - - - - - - - - - - - -ctgtaag
- - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg