1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgtaattgtaacatattttagtggcctcaatatttgtttacaggcttgaaatcaaacatgttatttacttcttataacttattgttttcgtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAGGAGAAAGATGGAA
species | Glycine max |
transcript | GLYMA01G02390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|193335947|gb|FK300647.1|FK300647
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: TGTTATAAGCAGCTTCAATGATTTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGTAGATAAAGCAAGCACTEST: gi|12773584|gb|BG238511.1|BG238511
genomic: TGTTATAAGCAGCTTCAATGA-TTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAG-AGATAAAGCAAGCACT
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|193495906|gb|FK458570.1|FK458570
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|193721835|gb|FK656989.1|FK656989
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|207844511|gb|GD813520.1|GD813520
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: TCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|193387079|gb|FK352482.1|FK352482
genomic: TCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|15203931|gb|BI426699.1|BI426699
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|31308804|gb|CD394007.1|CD394007
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|193668867|gb|FK611103.1|FK611103
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|208271665|gb|GE071877.1|GE071877
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|192322638|gb|FK014375.1|FK014375
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTAEST: gi|192326774|gb|FK018901.1|FK018901
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
EST: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGG GCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
genomic: GTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGGGgtttgtaatt ... gtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTA
cttgaaatcaaacatgttatttacttcttataacttattgttttcgtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAGGAGAAAGATGGAA
ttataac putative branch site (score: 2)
ttttcgt putative PPT
ttatttacttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaattgtaacatattttagtggcctcaatatttgtttacaggcttgaaatcaaacatgttatttacttcttataacttattgttttcgtggtcttagGCAGCAGAGCAGAGAAATTGTATGAACCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAGGAGAAAGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
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