1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtttgccaactttgccaattctgctggttaaaaatagtctacaagagttggtaagattcgattggtgatctttgcaaaatttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG
species | Glycine max |
transcript | GLYMA20G25120.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGEST: gi|14999379|gb|BI320344.1|BI320344
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAGG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGEST: gi|193656731|gb|FK603763.1|FK603763
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGEST: gi|7685172|gb|AW755820.1|AW755820
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGEST: gi|5753691|gb|AI960978.1|AI960978
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAT GTGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGCAGTTGATCCATTGAAGEST: gi|208043203|gb|GD837849.1|GD837849
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAEST: gi|21601019|gb|BQ611350.1|BQ611350
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGG-TTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAA
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
genomic: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAG
tctacaagagttggtaagattcgattggtgatctttgcaaaatttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG
tttttgttttt CT-rich tract
tttgcaaaatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgccaactttgccaattctgctggttaaaaatagtctacaagagttggtaagattcgattggtgatctttgcaaaatttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTGAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG