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gtaaagtgatcttgttctttttctttccgataatggcaatgccatttaccttctgaacgaatttgtttttctatacatgtgattataaatcttaatttttgtacatcattttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTTAACCATCTGGATGCCTCTAAAGCTGTTTGTCTGATGCCATGATTTTTAA
species | Glycine max |
transcript | GLYMA13G40010.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAG GGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTTEST: gi|51341316|gb|CO982633.1|CO982633
genomic: GGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgat ... ttttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTT
EST: TCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAG GGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTTEST: gi|9984709|gb|BE658817.1|BE658817
genomic: TCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgat ... ttttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTT
EST: TCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAG GGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTT
genomic: TCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGgtaaagtgat ... ttttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTT
tgtttttctatacatgtgattataaatcttaatttttgtacatcattttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTTAACCATCTGGATGCCTCTAAAGCTGTTTGTCTGATGCCATGATTTTTAA
tcttaat putative branch site (score: 3)
ttttgttc putative PPT
attataaatcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgatcttgttctttttctttccgataatggcaatgccatttaccttctgaacgaatttgtttttctatacatgtgattataaatcttaatttttgtacatcattttgttcagGGAAACACACGTGAAGAGCTCCCTGAATTTCTCCTTGGAACTTGCCGCCTTAACCATCTGGATGCCTCTAAAGCTGTTTGTCTGATGCCATGATTTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT