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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatggaagttatcattttcccagtgaataactttattcaaagtagtagtgtagtactagttatgaatggtgcactttttcctagccttgctagtgaaataaagagcatgactctctcattccctccttttattcacattttatggcaattgaatatgcttgtgaataatctctggttctttgtttaacagATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGAAGTTACAAGATACCAATTTGTGTGTTGTCTCTATTTATGCCTTTTTTTT

Basic information

species Glycine max
transcript GLYMA13G34970.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719726|gb|AW307373.1|AW307373
EST:     CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAG                         ATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAG
genomic: CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAGgtttatggaa ... tgtttaacagATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAG
EST: gi|12690565|gb|BG156901.1|BG156901
EST:     CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAG                         ATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGA
genomic: CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAGgtttatggaa ... tgtttaacagATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGA
EST: gi|8283101|gb|BE020670.1|BE020670
EST:     CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAG                         ATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGA
genomic: CATAATTCAAATAGCAATTTAAGCCCACTAGCAAGATTTCTTCTCTCAAGgtttatggaa ... tgtttaacagATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttatggcaattgaatatgcttgtgaataatctctggttctttgtttaacagATGGCAGGGCCAAACCTCACGGGATCTAAACCCATCTTGAGCAGAGTTTGAAGTTACAAGATACCAATTTGTGTGTTGTCTCTATTTATGCCTTTTTTTT
                                        ttctttgttt  CT-rich tract
           aattgaatat  TA-rich tract