1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tcttagttcttatgtatctcttagtgaatgtttgatttttgtatcttttgggcataggtgattgttttttgatggcgatttttgtatcttttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACCGAGGAGC
species | Glycine max |
transcript | GLYMA10G01660.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAG GTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTEST: gi|22929796|gb|BU546935.1|BU546935
genomic: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGgttggaatta ... ttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
EST: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAG GTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTEST: gi|254331545|gb|GR843502.1|GR843502
genomic: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGgttggaatta ... ttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
EST: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAG GTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTEST: gi|120531925|gb|EH260058.1|EH260058
genomic: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGgttggaatta ... ttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
EST: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAG GTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTEST: gi|254331546|gb|GR843503.1|GR843503
genomic: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGgttggaatta ... ttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
EST: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAG GTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
genomic: TAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGgttggaatta ... ttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCT
ttttgggcataggtgattgttttttgatggcgatttttgtatcttttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACCGAGGAGC
ttttgat putative branch site (score: 4)
tttttgtatctttt putative PPT
atttttgtatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttagttcttatgtatctcttagtgaatgtttgatttttgtatcttttgggcataggtgattgttttttgatggcgatttttgtatcttttgggcatagGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACCGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - cttttgg