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21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaacagagctgtctgcctgtaaacagtttgtacttatgatttgagattttttgatgttaatgcaaagttcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAG
species | Glycine max |
transcript | GLYMA07G03180.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTGAACTCAAAGGCCATAATAGAAGAATTACTGGTCTTGCTTTCEST: gi|208111923|gb|GD911041.1|GD911041
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: GGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|26045637|gb|CA783164.1|CA783164
genomic: GGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|15285824|gb|BI469715.1|BI469715
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|4296432|gb|AI442474.1|AI442474
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAA-ATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|6482439|gb|AW201698.1|AW201698
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG G-TAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|207841291|gb|GD810700.1|GD810700
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|26047722|gb|CA784429.1|CA784429
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|4260444|gb|AI416940.1|AI416940
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCEST: gi|207795116|gb|GD763537.1|GD763537
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGCCATAATAAAAGEST: gi|20449020|gb|BQ253144.1|BQ253144
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAG
EST: AGGCATGGATGATTCCTCTATTCAAATATATAATGTCC-TTTTCTTTGAG TTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTEST: gi|13252657|gb|BG363560.1|BG363560
genomic: AGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTT-GATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTT
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTAEST: gi|16346954|gb|BI972549.1|BI972549
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTA
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAEST: gi|15337518|gb|BI498174.1|BI498174
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAA
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagagc ... tcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTC
cagtttgtacttatgatttgagattttttgatgttaatgcaaagttcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAG
tgttaat putative branch site (score: 3)
ttcttttgc putative PPT
attttttgatgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagagctgtctgcctgtaaacagtttgtacttatgatttgagattttttgatgttaatgcaaagttcttttgcagGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG