1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gataattggtattttggggatttgctgattgttttaattgcacaaactgcatacaatcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
species | Glycine max |
transcript | GLYMA19G45140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: NGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGEST: gi|254338828|gb|GR847545.1|GR847545
genomic: AGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
EST: NGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGEST: gi|151410157|gb|EV279965.1|EV279965
genomic: AGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
EST: NGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGEST: gi|151406841|gb|EV276656.1|EV276656
genomic: AGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
EST: NGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGEST: gi|254320308|gb|GR831116.1|GR831116
genomic: AGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
EST: NGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTG GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
genomic: AGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGgtatgtgtga ... gttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTG
actgcatacaatcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
tttcttttgttgtt CT-rich tract
ttttgtaaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataattggtattttggggatttgctgattgttttaattgcacaaactgcatacaatcttgtgtacttttgtaaatgttagatttcttttgttgttgtagGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - tttgggg
- - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtac