1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttcagagctctgatcccttatgggtggtatatatatatatatatatatatagtttttgattaaggtgtatttggttctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGATAATGTTAGTCCACTTGAAGATATTACTTCAC
species | Glycine max |
transcript | GLYMA19G42850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|7284299|gb|AW596893.1|AW596893
genomic: AGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|31561880|gb|CD487718.1|CD487718
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|22525870|gb|BU084681.1|BU084681
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|308222656|gb|HO760571.1|HO760571
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|192297826|gb|FG988324.1|FG988324
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|24136644|gb|BU927154.1|BU927154
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAEST: gi|51335698|gb|CO979564.1|CO979564
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
EST: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGG GGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
genomic: GGTCTGAGCTCTTCAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGgtgagttcag ... tctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCA
atatatatatatatatatatagtttttgattaaggtgtatttggttctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGATAATGTTAGTCCACTTGAAGATATTACTTCAC
ttttgat putative branch site (score: 4)
ttctgtt putative PPT
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcagagctctgatcccttatgggtggtatatatatatatatatatatatagtttttgattaaggtgtatttggttctgttgtagGGCACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGATAATGTTAGTCCACTTGAAGATATTACTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA