1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatataggattttcaatttttttaattgtgttgttgttgtttcatttatggttcctataatgcaaatatgctggcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGATATGTTTGCTATGGATAGTTTGCTTCAGTTTT
species | Glycine max |
transcript | GLYMA19G32600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGEST: gi|51341156|gb|CO982473.1|CO982473
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGEST: gi|151403622|gb|EV273432.1|EV273432
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGEST: gi|254314306|gb|GR824547.1|GR824547
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTAC-TTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGEST: gi|254341127|gb|GR854855.1|GR854855
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGEST: gi|19268730|gb|BM884986.1|BM884986
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
EST: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAG GATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
genomic: ACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGgtatatagga ... gcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTG
tgttgttgttgtttcatttatggttcctataatgcaaatatgctggcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGATATGTTTGCTATGGATAGTTTGCTTCAGTTTT
tataatgcaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataggattttcaatttttttaattgtgttgttgttgtttcatttatggttcctataatgcaaatatgctggcgtactcagGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGATATGTTTGCTATGGATAGTTTGCTTCAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC