1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgttgtattgtttcaatttgttgatgaaaatttggttcccatgcaacaagatgattgtgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTAT
species | Glycine max |
transcript | GLYMA19G24620.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTEST: gi|192326431|gb|FK017703.1|FK017703
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCT
aacaagatgattgtgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTAT
tgctaat putative branch site (score: 2)
ttgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgtattgtttcaatttgttgatgaaaatttggttcccatgcaacaagatgattgtgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
-tgttgta
- - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg