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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctcttttttgttttttgtggaaatttactggattttctagtagttgttcgtttcccttaaagcaacattttccaacatttggcatctctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG

Basic information

species Glycine max
transcript GLYMA19G24250.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24250.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 3'ss of exon 2
ttcctcttttttgttttttgtggaaatttactggattttctagtagttgttcgtttcccttaaagcaacatt---ttccaacatttggcatctctatt---ttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG
          |  |   ||     || |   | ||   |||| |   |  | |||      | |      ||   | | ||| ||  |    | |  |   | |||||||||||||   || |||| || ||||||||||| ||||||||||| || ||||| ||||| || |||||||| ||  | |||||
------ggaatcatggattacatgaactatttagacactctattttgttattgttcaagcaacaatgtacttgcatgctaactttgagttggtgtgatgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294272|gb|FG986361.1|FG986361
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|298180491|gb|HO022044.1|HO022044
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|213594579|gb|DB957998.1|DB957998
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|213611006|gb|DB970933.1|DB970933
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|298167590|gb|HO012853.1|HO012853
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTT-GGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|19053331|gb|BM731998.1|BM731998
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
EST: gi|254334914|gb|GR844699.1|GR844699
EST:     ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAG                         GGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCATCTATACCGGCAGgtaaagaaga ... ctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttcgtttcccttaaagcaacattttccaacatttggcatctctattttcagGGATTCTTACCAGCAGATGAAGTTCACATTTTTGGCTATGCAAGGACAAAAATATCTGATGATGAATTGAGAAACCGGTTGCGTGG
                                          tctctattttc  CT-rich tract
                     aacatttt  TA-rich tract