1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttcttggcaatttgcagtaatctttgatgttattatcaattgcatgcagcttgctatgtaattaccttgactttgtggctgtttgctattattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG
species | Glycine max |
transcript | GLYMA18G04360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|192332257|gb|FK023906.1|FK023906
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGCTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|298186757|gb|HO037390.1|HO037390
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|213600856|gb|DB958434.1|DB958434
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|7684914|gb|AW755562.1|AW755562
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|27423806|gb|CA935326.1|CA935326
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|298188142|gb|HO032099.1|HO032099
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGEST: gi|213588703|gb|DB957697.1|DB957697
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
EST: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGG GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
genomic: TCCCTCGAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGtttttctctt ... tattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATG
tgcagcttgctatgtaattaccttgactttgtggctgtttgctattattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG
ccttgac putative branch site (score: 4)
ttattctc putative PPT
tatgtaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttggcaatttgcagtaatctttgatgttattatcaattgcatgcagcttgctatgtaattaccttgactttgtggctgtttgctattattctcaggGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG
- - - - - - -tgcagta
- - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt