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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatataatctatgactatttactatttagttacttttcgtcatcaacataatattgttttgtgtgtgaaaatatttttcataaataaacttgccagagtaatactgttatttgttagtttgttacttgttagtttcaattttttggaattcttgatcaatttaattatatttatatgtatattgtaaattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGT

Basic information

species Glycine max
transcript GLYMA17G18800.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664754|gb|BI702125.1|BI702125
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|151396856|gb|EV266729.1|EV266729
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192298672|gb|FG990968.1|FG990968
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACC-ACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|10844495|gb|BF067754.1|BF067754
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|11690188|gb|BF597864.1|BF597864
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|14125214|gb|BG789661.1|BG789661
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|16996333|gb|BM085705.1|BM085705
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192331915|gb|FK026699.1|FK026699
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|9565068|gb|BE474577.1|BE474577
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|12489965|gb|BG043486.1|BG043486
EST:     GCANCGAGTGGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GCA-CGAGT-GCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|208293117|gb|GE096381.1|GE096381
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAA
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAA
EST: gi|19052685|gb|BM731352.1|BM731352
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|7326739|gb|AW620537.1|AW620537
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|7326591|gb|AW620389.1|AW620389
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|6073074|gb|AW102461.1|AW102461
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|8284014|gb|BE021573.1|BE021573
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|21285555|gb|BQ473426.1|BQ473426
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|10233953|gb|BE802841.1|BE802841
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|6916007|gb|AW397537.1|AW397537
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTAATGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|13125541|gb|BG316111.1|BG316111
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|10233011|gb|BE801899.1|BE801899
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCANAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|9902340|gb|BE611308.1|BE611308
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192299019|gb|FG992825.1|FG992825
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|6719304|gb|AW306951.1|AW306951
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|19053948|gb|BM732615.1|BM732615
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|37995048|gb|CF806637.1|CF806637
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|308098954|gb|HO760795.1|HO760795
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|10234308|gb|BE803196.1|BE803196
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|208128283|gb|GD921283.1|GD921283
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGG
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGG
EST: gi|15815899|gb|BI788174.1|BI788174
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|13790564|gb|BG653155.1|BG653155
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192299084|gb|FG992860.1|FG992860
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|4290097|gb|AI438020.1|AI438020
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|151393265|gb|EV263140.1|EV263140
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192299085|gb|FG992861.1|FG992861
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|15816093|gb|BI788368.1|BI788368
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|11411713|gb|BF423783.1|BF423783
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|7686708|gb|AW757356.1|AW757356
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|15001155|gb|BI321969.1|BI321969
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192306106|gb|FG993682.1|FG993682
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTCGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|19269468|gb|BM885724.1|BM885724
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|192295646|gb|FG990500.1|FG990500
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|151397016|gb|EV266889.1|EV266889
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|5752909|gb|AI960196.1|AI960196
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|4290489|gb|AI438081.1|AI438081
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|16106335|gb|BI894075.1|BI894075
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|14008595|gb|BG725199.1|BG725199
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
EST: gi|308098846|gb|HO760687.1|HO760687
EST:     GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT                         GAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT
genomic: GAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTgtaaaatata ... aattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaattcttgatcaatttaattatatttatatgtatattgtaaattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGT
                 atttaat  putative branch site (score: 4)
             atcaatttaattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatataatctatgactatttactatttagttacttttcgtcatcaacataatattgttttgtgtgtgaaaatatttttcataaataaacttgccagagtaatactgttatttgttagtttgttacttgttagtttcaattttttggaattcttgatcaatttaattatatttatatgtatattgtaaattaaacagGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC