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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatgtatttattgttggaattgaaaactgataaaaattagttggttgaatagttaaactgaattgaattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGGAGAGACAATCAGGAGGCCGTTTTTGGCACCGAGGAAGGATTGAAAGATA

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608242|gb|DB972626.1|DB972626
EST:     GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG                         GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
EST: gi|213616699|gb|DB969195.1|DB969195
EST:     GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG                         GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
EST: gi|209709889|gb|BW668293.1|BW668293
EST:     GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAG                         GGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG
genomic: GTATGAGCAGTTCAAGCAAGAAGGGAAGCTGTTAGAGgtcatgtatt ... aattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaactgataaaaattagttggttgaatagttaaactgaattgaattgaacagGGCGAGGATTTGGACTTTGCTTACGACAGCATCTCTGCATTCTCTGATAGGAGAGACAATCAGGAGGCCGTTTTTGGCACCGAGGAAGGATTGAAAGATA
    aactgat  putative branch site (score: 3)
       tgataaaaattagtt  TA-rich tract