1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atactggagaaatggttttattacatttttactttcttatggcattgatttatgcttatctctgttttaatttgtaattattttgtttttttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACCAAGGAAAGGA
species | Glycine max |
transcript | GLYMA17G05130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|192322757|gb|FK014448.1|FK014448
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAGGGGAGCCATGATAGAAAAGEST: gi|6070770|gb|AW100157.1|AW100157
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|298179386|gb|HO027857.1|HO027857
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|208094165|gb|GD893974.1|GD893974
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|14259415|gb|BG882323.1|BG882323
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTG TTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATTACAAGCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
tgatttatgcttatctctgttttaatttgtaattattttgtttttttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACCAAGGAAAGGA
ttttaat putative branch site (score: 3)
ttattttgtttttttt putative PPT
tctgttttaatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactggagaaatggttttattacatttttactttcttatggcattgatttatgcttatctctgttttaatttgtaattattttgtttttttttaaatagTTTCAACATCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACCAAGGAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
atactgg
- - - - - - - - - - - - - - - - - -cttatgg