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gtggatcctccaatccttttttgttttaaatactactgtataacaatgaagaccgttttcagaaatgtgtgtttaatatttttttctttatgattcattttgtcaataagatcgtgctatgttttgttggtaatttgatctgatattctttggttgtgtttttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
species | Glycine max |
transcript | GLYMA17G03990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|209699970|gb|BW661199.1|BW661199
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|213611707|gb|DB969095.1|DB969095
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|207782813|gb|GD752396.1|GD752396
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: AATGGTGTAAAAATTATTCACTTTGTACTTATCCCGCCGATCCTCTCTAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|298190390|gb|HO032511.1|HO032511
genomic: AATGGTG-AAAAA-TATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|192321624|gb|FK013968.1|FK013968
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|13481495|gb|BG510838.1|BG510838
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|19453433|gb|BM954843.1|BM954843
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|213597925|gb|DB958306.1|DB958306
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGGEST: gi|209712397|gb|BW671249.1|BW671249
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
EST: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAG GAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
genomic: TGAATGGTGAAAAATATTCACTTTGTACTTATCCCGCCGATCCTCTCCAGgtggatcctc ... tttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
gctatgttttgttggtaatttgatctgatattctttggttgtgtttttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
atctgat putative branch site (score: 4)
tgtttttc putative PPT
taatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatcctccaatccttttttgttttaaatactactgtataacaatgaagaccgttttcagaaatgtgtgtttaatatttttttctttatgattcattttgtcaataagatcgtgctatgttttgttggtaatttgatctgatattctttggttgtgtttttcatgcagGAAATCGACTTGAAGAACCACAAATGGGGACATTATTTTATATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC