1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttttctaatacttttggttatgtatacatttatttatatgtttatgaaattagatagatagatagatgacataaattatgctaaactctttgacacagCTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAAGGAGACACATCCTTGTGGAAAAACAACACAAATAGCAGCTTCAGATTTA
species | Glycine max |
transcript | GLYMA16G27630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCATCAATGTCTCCATCAAAAGTGGTAGCCACAGCACCATATTACCCG CTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAAEST: gi|192305620|gb|FG998348.1|FG998348
genomic: ACCCATCAATGTCTCCAGCAAAAGTGGTAGCCACAGCACCATATTACCCGgtgagttcca ... tttgacacagCTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAA
EST: CATATTACCCG CTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAA
genomic: CATATTACCCGgtgagttcca ... tttgacacagCTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAA
atgaaattagatagatagatagatgacataaattatgctaaactctttgacacagCTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAAGGAGACACATCCTTGTGGAAAAACAACACAAATAGCAGCTTCAGATTTA
ctcttt CT-rich tract
ataaattatgctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttctaatacttttggttatgtatacatttatttatatgtttatgaaattagatagatagatagatgacataaattatgctaaactctttgacacagCTCTATAGAGAACAAACGCAATTTTTTAATTCTAGGGATTTTAGTTATGAAGGAGACACATCCTTGTGGAAAAACAACACAAATAGCAGCTTCAGATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - -ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaac