1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctatttgagaattttataccaatggcttaggacataaagaaaattcttttggtaatttttctttggtagcacagttgctgatgtggtcatctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTGAACTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTC
species | Glycine max |
transcript | GLYMA16G27420.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGG GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTEST: gi|254315421|gb|GR825230.1|GR825230
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
EST: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTATG GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTEST: gi|37994616|gb|CF806293.1|CF806293
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
EST: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGG GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
ttcttttggtaatttttctttggtagcacagttgctgatgtggtcatctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTGAACTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTC
tgctgat putative branch site (score: 3)
taatttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatttgagaattttataccaatggcttaggacataaagaaaattcttttggtaatttttctttggtagcacagttgctgatgtggtcatctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTGAACTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTC
- - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgg