1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggaacttttttaaacccttttttttttaatttgaaaaggttttgctatgaatataaaattatcataagccataaagggtgtatatattattgcacacagGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAAC
species | Glycine max |
transcript | GLYMA16G13570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAG GTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTEST: gi|6133929|gb|AW132322.1|AW132322
genomic: CGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGgtacatatac ... ttgcacacagGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGT
EST: CGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAG GTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAGAGAAGGT
genomic: CGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGgtacatatac ... ttgcacacagGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGT
ctatgaatataaaattatcataagccataaagggtgtatatattattgcacacagGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAAC
aatataaaattatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaacttttttaaacccttttttttttaatttgaaaaggttttgctatgaatataaaattatcataagccataaagggtgtatatattattgcacacagGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgta